| alpha_angles_begin() | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| alpha_angles_begin() const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| alpha_angles_end() | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| alpha_angles_end() const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| Alpha_const_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Alpha_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Atom typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Atoms_const_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Atoms_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| c4ps_begin() | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| c4ps_begin() const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| c4ps_end() | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| c4ps_end() const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| Chain typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Chosen_angle_const_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Chosen_angle_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Conformation_type typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Dihedral_angle typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Dihedral_angle_const_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Dihedral_angle_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| FT typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| get_alpha_angle(const Residue &res) const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| get_alpha_angle(unsigned resn) const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| get_beta_angle(const Residue &res) const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| get_beta_angle(unsigned resn) const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| Is_Heavy typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| is_residue_heavy_atoms_embedded(const Residue &res) const | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| Molecular_covalent_structure typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| P_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Particle_traits typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Residue typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Residue_atoms_const_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Residue_atoms_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Residues_const_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Residues_iterator typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| Self typedef | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | |
| T_Polynucleotide_chain_representation() | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |
| T_Polynucleotide_chain_representation(Chain &c, Molecular_covalent_structure &s, const Conformation_type &mc) | T_Polynucleotide_chain_representation< ParticleTraits, MolecularCovalentStructure, ConformationType > | inline |