add_water(Residue &residue, CovalentStructure &S) const | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | inline |
make_atom(Residue &residue, CovalentStructure &S, const char *atom_names[], int k, int ter) const | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
make_atom(Residue &residue, CovalentStructure &S, const std::string &atom_name, int ter) const | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
make_backbone(Residue &residue, CovalentStructure &S, Particle_rep &c_alpha, int ter) const | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
make_martini(Residue &residue, CovalentStructure &S, bool &b) const | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
make_residue(Residue &residue, CovalentStructure &S, bool &b) const | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
operator()(Structure &structure, CovalentStructure &S) const | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | inline |
Particle_info typedef | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
Particle_info_aliases typedef | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
Particle_info_builder typedef | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
Particle_info_traits typedef | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
Particle_rep typedef | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
Self typedef | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | |
T_Molecular_covalent_structure_builder_for_proteins(unsigned coarse_level=0, double max_bond_distance=3) | T_Molecular_covalent_structure_builder_for_proteins< CovalentStructure > | inline |