Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
T_Molecular_covalent_structure< ParticleInfo > Member List

This is the complete list of members for T_Molecular_covalent_structure< ParticleInfo >, including all inherited members.

add_bond(Particle_rep p, Particle_rep q, Bond_type bond_type=SIMPLE_BOND)T_Molecular_covalent_structure< ParticleInfo >inline
add_improper_constraint(Particle_rep p, Particle_rep q, Particle_rep r, Particle_rep s)T_Molecular_covalent_structure< ParticleInfo >inline
add_particle(const Particle_info &info)T_Molecular_covalent_structure< ParticleInfo >inline
are_1_2(Particle_rep p, Particle_rep q) constT_Molecular_covalent_structure< ParticleInfo >inline
are_1_3(Particle_rep p, Particle_rep q) constT_Molecular_covalent_structure< ParticleInfo >inline
are_1_4(Particle_rep p, Particle_rep q) constT_Molecular_covalent_structure< ParticleInfo >inline
Bond_angle_rep typedefT_Molecular_covalent_structure< ParticleInfo >
bond_angles_begin(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
bond_angles_end(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
Bond_angles_iterator typedefT_Molecular_covalent_structure< ParticleInfo >
Bond_rep typedefT_Molecular_covalent_structure< ParticleInfo >
Bond_type enum nameT_Molecular_covalent_structure< ParticleInfo >
bonds_begin(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
bonds_end(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
Bonds_iterator typedefT_Molecular_covalent_structure< ParticleInfo >
Bonds_iterator_base typedefT_Molecular_covalent_structure< ParticleInfo >
Bonds_iterator_filtered typedefT_Molecular_covalent_structure< ParticleInfo >
Covalent_structure_graph typedefT_Molecular_covalent_structure< ParticleInfo >
Covalent_structure_graph_traits typedefT_Molecular_covalent_structure< ParticleInfo >
dihedral_angles_begin(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
dihedral_angles_end(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
Dihedral_angles_iterator typedefT_Molecular_covalent_structure< ParticleInfo >
DOUBLE_BOND enum valueT_Molecular_covalent_structure< ParticleInfo >
find_particle(const Particle_info &info) constT_Molecular_covalent_structure< ParticleInfo >inline
get_bond(Bond_angle_rep b, unsigned i) constT_Molecular_covalent_structure< ParticleInfo >inline
get_bond(Torsion_angle_rep b, unsigned i) constT_Molecular_covalent_structure< ParticleInfo >inline
get_bond_angle_rep(Bond_rep b_1, Bond_rep b_2) constT_Molecular_covalent_structure< ParticleInfo >inline
get_bond_rep(Particle_rep p, Particle_rep q) constT_Molecular_covalent_structure< ParticleInfo >inline
get_cannonized_rep(Bond_rep b) constT_Molecular_covalent_structure< ParticleInfo >inline
get_cannonized_rep(Bond_angle_rep a) constT_Molecular_covalent_structure< ParticleInfo >inline
get_cannonized_rep(Torsion_angle_rep a) constT_Molecular_covalent_structure< ParticleInfo >inline
get_graph(void) constT_Molecular_covalent_structure< ParticleInfo >inline
get_graph(void)T_Molecular_covalent_structure< ParticleInfo >inline
get_mirror_bond_rep(Bond_rep u) constT_Molecular_covalent_structure< ParticleInfo >inline
get_model_position(Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
get_molecule(Particle_rep p, Self &S)T_Molecular_covalent_structure< ParticleInfo >inline
get_molecules(OutputIterator out) constT_Molecular_covalent_structure< ParticleInfo >inline
get_number_of_bonds(void) constT_Molecular_covalent_structure< ParticleInfo >inline
get_number_of_embedded_bonds(void) constT_Molecular_covalent_structure< ParticleInfo >inline
get_number_of_embedded_particles(void) constT_Molecular_covalent_structure< ParticleInfo >inline
get_number_of_modeled_bonds(void) constT_Molecular_covalent_structure< ParticleInfo >inline
get_number_of_modeled_particles(void) constT_Molecular_covalent_structure< ParticleInfo >inline
get_number_of_particles(void) constT_Molecular_covalent_structure< ParticleInfo >inline
get_particle_rep(Bond_rep b, unsigned i) constT_Molecular_covalent_structure< ParticleInfo >inline
get_particle_rep(Bond_angle_rep b, unsigned i) constT_Molecular_covalent_structure< ParticleInfo >inline
get_particle_rep(Torsion_angle_rep b, unsigned i) constT_Molecular_covalent_structure< ParticleInfo >inline
get_particles(Bond_rep b) constT_Molecular_covalent_structure< ParticleInfo >inline
get_particles_in_molecule(Particle_rep p, OutputIterator out) constT_Molecular_covalent_structure< ParticleInfo >inline
get_sub_structure(InputIterator begin, InputIterator end, Self &S)T_Molecular_covalent_structure< ParticleInfo >inline
get_sub_structure(InputIterator begin, InputIterator end, Self &S)T_Molecular_covalent_structure< ParticleInfo >
get_torsion_angle_rep(Bond_rep b_1, Bond_rep b_2, Bond_rep b_3) constT_Molecular_covalent_structure< ParticleInfo >inline
get_x(const Conformation &C, Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
get_x(Conformation &C, Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
get_y(const Conformation &C, Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
get_y(Conformation &C, Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
get_z(const Conformation &C, Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
get_z(Conformation &C, Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
has_model(Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
improper_angles_begin(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
improper_angles_end(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
Improper_angles_iterator typedefT_Molecular_covalent_structure< ParticleInfo >
Improper_angles_iterator_base typedefT_Molecular_covalent_structure< ParticleInfo >
incident_bonds_begin(Particle_rep p, bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
incident_bonds_end(Particle_rep p, bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
Incident_bonds_iterator typedefT_Molecular_covalent_structure< ParticleInfo >
Incident_bonds_iterator_base typedefT_Molecular_covalent_structure< ParticleInfo >
is_embedded(Particle_rep p) constT_Molecular_covalent_structure< ParticleInfo >inline
is_fully_embedded(void) constT_Molecular_covalent_structure< ParticleInfo >inline
Particle_info typedefT_Molecular_covalent_structure< ParticleInfo >
Particle_info_traits typedefT_Molecular_covalent_structure< ParticleInfo >
Particle_rep typedefT_Molecular_covalent_structure< ParticleInfo >
particles_begin(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
particles_end(bool is_embedded=true) constT_Molecular_covalent_structure< ParticleInfo >inline
Particles_iterator typedefT_Molecular_covalent_structure< ParticleInfo >
Particles_iterator_base typedefT_Molecular_covalent_structure< ParticleInfo >
print(std::ostream &out) constT_Molecular_covalent_structure< ParticleInfo >
Self typedefT_Molecular_covalent_structure< ParticleInfo >
set_particle_position(Particle_rep p, int position)T_Molecular_covalent_structure< ParticleInfo >inline
SIMPLE_BOND enum valueT_Molecular_covalent_structure< ParticleInfo >
Torsion_angle_rep typedefT_Molecular_covalent_structure< ParticleInfo >
TRIPLE_BOND enum valueT_Molecular_covalent_structure< ParticleInfo >