Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
Packages
List of all packages provided by the library
[detail level 123]
 Reference Manuals
 Alignment_engines
 Alpha_complex_of_molecular_model
 Alpha_complexes_extensions
 Apurva
 Batch_manager
 Betti_numbers
 Binding_affinity_prediction
 Buried_surface_area
 Cell_complex_shelling_diagram
 Cluster_engines
 Conformational_ensemble_analysis
 Conformational_ensemble_comparison
 ConformationMoveset
 ConformationTraits
 Connectivity_inference
 D_family_matching
 Density_difference_based_clustering
 Dijkstra_shortest_paths_with_landmarks
 Directed_acyclic_graph
 Earth_mover_distance
 Energy_landscape_analysis
 Energy_landscape_comparison
 Greedy_selection
 Landscape_explorer
 Maximum_clique
 Minimal_oriented_spanning_forest
 Module_base
 Molecular_coordinates
 Molecular_covalent_structure
 Molecular_distances
 Molecular_geometric_model_classifier
 Molecular_interfaces
 Molecular_potential_energy
 Molecular_structure_classifier
 Molecular_viewersViewer writing in VMD file format
 MolecularGeometryLoader
 MolecularSystemLabelsTraits
 Morse_Smale_Witten_chain_complex
 Morse_theory_based_analyzer
 Multiple_archives_serialization
 Nearest_neighbors_graph_builder
 Ordered_forest_edit_distance
 PALSE
 ParticleAnnotator
 ParticleTraits
 Point_cloud_rigid_registration_3
 Pointwise_interactions
 Product_graph
 Random_generation
 Real_value_function_minimizer
 Space_filling_model_coarse_graining
 Space_filling_model_interface
 Space_filling_model_interface_finder
 Space_filling_model_shelling_diagram_comparison
 Space_filling_model_shelling_diagram_surface_encoding
 Space_filling_model_surface_volume
 Spatial_search
 Specialized_iterators
 Spherical_kernel_extension_3
 Tertiary_quaternary_structure_annotator
 Transition_graph_of_energy_landscape_builders
 Transition_graph_traits
 Triangulations_extensions_3
 Union_find
 Union_of_balls_boundary_3
 Union_of_balls_boundary_patch_shelling_3
 Union_of_balls_medial_axis_3
 Union_of_balls_mesh_3
 Union_of_balls_surface_volume_3
 UnitSystemTraits
 Models
 ConformationMovesetThis package provides different methods for extending a conformation to a new one
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus and C. Roth
 ConformationTraitsConcept defining geometric (and possibly biophysical) properties of a conformation.
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus and C. Roth
 MolecularGeometryLoaderConcept defining how to load a molecular geometric model from a file.
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 MolecularSystemLabelsTraitsConcept defining labels to identify particles in a molecular system associated to a molecular structure
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 ParticleAnnotatorConcept defining how to decorate particles with supplemental information.
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 ParticleTraitsConcept defining geometric (and possibly biophysical) properties of a particle.
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 UnitSystemTraitsConcept defining types and constants for physical unit systems
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 ModulesModules framework for defining a workflow for the applications
 Module_baseFramework for building generic blocks of algorithms and generic workflows for applications.
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus
 CoreGeneric algorithms of the SBL library
 CADSCombinatorial Algorithms and Data Structures
 GTGeometry and Topology
 CSBComputational Structural Biology
 STATSStatistics
 IOInput / Output
 ApplicationsThis page lists all program programs of the SBL library. These programs are either applications, or short programs associated with packages from the Core
 Space Filling ModelApplications dealing with molecular geometric models defined by union of balls
 Conformational AnalysisApplications dealing with molecular flexibility
 Data ManagementApplications used to handle input data and results
 Data AnalysisApplications used to perform analysis on various data
 AssembliesApplications dealing with macro-molecular assemblies
 Integrated AnalysisApplications combining several ingredients from the previous groups