Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
Modules

Packages

 Module_base
 Framework for building generic blocks of algorithms and generic workflows for applications.
Reference ManualUser Manual . Authors: F. Cazals and T. Dreyfus

 

Classes

class  T_Archive_file_loader< InputArchive, SerializedData >
 Loader for one or more boost archive files. More...
 
class  T_Multiple_archives_xml_archive_file_loader< SecondaryArchive, SecondaryData, SerializedData >
 Loader for one or more multiple archives xml archive files. More...
 
class  T_Primitive_labels_loader< PartnerLabelsTraits, MediatorLabelsTraits, ExtraLabelsTraits >
 Loader for systems' labels specification. More...
 
class  T_PDB_file_loader< ESBTLMolecularSystem, PDBLineFormat >
 Loader for one or more PDB files, even listed in a file. More...
 
class  T_Points_d_file_loader< PointD >
 Loader for one or more txt files listing dD points. More...
 
class  T_Spheres_3_file_loader< Sphere3, Point3 >
 Loader for one or more txt files listing 3D spheres. More...
 
class  T_Alignment_sequences_module< ModuleTraits, AlignmentEngineSequences >
 Module which computes a pairwise alignment of two sequences. More...
 
class  T_Alignment_structures_module< ModuleTraits, AlignmentEngineStructures >
 Module which computes a pairwise alignment of two structures. More...
 
class  T_Alpha_complex_of_molecular_model_module< ModuleTraits >
 Module building the alpha-complex of an input set of particles. More...
 
class  T_Buried_surface_area_with_labels_module< ModuleTraits >
 Module building the buried surface areas from the alpha-complex of a molecular model. More...
 
class  T_Buried_surface_area_without_label_module< ModuleTraits >
 Module building the buried surface area of a partner from the alpha-complex of a molecular model. More...
 
class  T_Cluster_engine_module< ModuleTraits >
 Module which computes clusters from a cloud of points. More...
 
class  T_Minimal_oritend_spanning_forest_module
 Module building the minimal spanning forest of a weighted bipartite graph. More...
 
class  T_Molecular_interfaces_module< ModuleTraits >
 Module building the bicolor, mediated and tricolor interfaces of a molecular structure. More...
 
class  T_Molecular_structure_classifier_module< ModuleTraits >
 Module classifying the particles of a molecular structure following their system's labels. More...
 
class  T_Spatial_search_module< ModuleTraits, ApproximatedSpatialSearchEngine >
 Module building a data base for spatial-search from an input set of points. More...
 
class  T_Union_of_balls_boundary_3_module< ModuleTraits, ExactNT >
 Module building the boundary of the union of input 3D balls. More...
 
class  T_Union_of_balls_boundary_patch_shelling_3_module< ModuleTraits, OutputArchive >
 Module computing the shelling order forests of particles in a binding patch. More...
 
class  T_Union_of_balls_mesh_3_module< ModuleTraits >
 Module computing a sampling of an input boundary of the union of 3D balls. More...
 
class  T_Union_of_balls_surface_volume_3_module< ModuleTraits, OutputArchive >
 Module computing the surface area and the volume of the union of an input set of 3D balls. More...
 

Description

Modules framework for defining a workflow for the applications.

Modules are C++ classes instantiating C++ from the SBL core, so as to transform an input into an output. In other words, a module gives access to high level processing without having to resort to low level operations, so that an application workflow consists of interconnected modules. The Modules set of packages defines modules for selected classes from CADS, GT and CSB. In the following, three types of components are listed: