T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ > Member List

This is the complete list of members for T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >, including all inherited members.

add_cif_atom_to_sbl_residue(const cif::mm::atom &cif_atom, typename Molecular_system::Residue &sbl_residue, bool is_hetatm)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
add_options(void) override	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >	virtual
are_files_valid() const	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >
check_options(std::string &message) const override	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >	virtual
check_validity(void) const	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
delete_molecular_systems(void)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
get_molecular_covalent_structures(void) const	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >
get_molecular_covalent_structures(void)	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >
get_molecular_systems(void) const	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	inline
get_name(void) const override	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >	virtual
get_options(void)	T_Module_option_description< Dummy >	inlinestatic
get_output_prefix(void) const override	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >	virtual
load(unsigned verbose=false, std::ostream &out=std::cout) override	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >	virtual
load_molecular_covalent_structures(void)	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >	protected
load_molecular_systems(void)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
m_alt_discarded	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
m_atm_discarded	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
m_chain_discarded	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
m_h_discarded	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
m_hoh_discarded	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
m_htm_discarded	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
m_model_discarded	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
m_temp_discarded	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	protected
SET_AND_GET(allow_incomplete_chains, bool)	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >
SET_AND_GET(coarse_level, unsigned)	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >
SET_AND_GET(max_bond_distance, double)	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >
SET_AND_GET(ss_bond_search, bool)	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_file_paths, std::vector< std::string >)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_chains, std::vector< std::vector< std::string >>)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_models, std::vector< std::vector< std::size_t >>)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_water, bool)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_hetatoms, bool)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_hydrogens, bool)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_occupancy_mode, unsigned)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_alternate_selected, char)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(loaded_b_factor_limit, double)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::SET_AND_GET(pdb_checker, unsigned)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
statistics(std::ostream &out)	T_Molecular_covalent_structure_loader< Molecular_covalent_structure_builder_ >	inline
T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >::statistics(std::ostream &out) const	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
T_Molecular_system_loader(void)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >
~T_Molecular_system_loader(void)	T_Molecular_system_loader< Molecular_covalent_structure_builder_::Molecular_covalent_structure::Particle_info::Particle_traits::Molecular_system >	virtual