Container for interfaces edges of the alpha-complex that are connected and share the same interface. More...

#include <Molecular_interface_data_structure_base.hpp>

Classes
class	Have_labels
	Predicate initialized with one or two labels, that checks that a vertex has an ancestor of or equal given label, or an edge has ancestors of or equal given pair of labels. More...

Internal Public Types
typedef Base::value_type	value_type

typedef Base::iterator	iterator

typedef Base::const_iterator	const_iterator

Public Types
typedef Molecular_structure_traits::Particle_vertex_handle	Particle_vertex_handle

typedef Molecular_structure_traits::Particle_vertex_handle_with_order	Particle_vertex_handle_with_order

typedef boost::tuple< Particle_vertex_handle, Particle_vertex_handle >	Contact

typedef boost::tuple< Particle_vertex_handle_with_order, Particle_vertex_handle_with_order >	Contact_with_order

typedef boost::tuple< Particle_vertex_handle, Particle_vertex_handle, Particle_vertex_handle >	Contact_order_3

typedef boost::tuple< Particle_vertex_handle_with_order, Particle_vertex_handle_with_order, Particle_vertex_handle_with_order >	Contact_order_3_with_order

typedef Molecular_structure_traits::Partner_labels_traits	Partner_labels_traits
	Traits class providing the labels for the partners. More...

typedef Molecular_structure_traits::Mediator_labels_traits	Mediator_labels_traits
	Traits class providing the labels for the mediators. More...

typedef Partner_labels_traits::Label	Partner_label
	System's label associated to a partner. More...

typedef Mediator_labels_traits::Label	Mediator_label
	System's label associated to a mediator. More...

Iterator Types
typedef boost::indirect_iterator< typename Particle_set::const_iterator, const Particle_vertex_handle >	Particles_iterator
	Iterator over the interface vertices in this connected component. More...

typedef Base::const_iterator	Contacts_iterator
	Iterator over the interface edges of this connected component. More...

typedef boost::filter_iterator< Is_frontier, typename Contact_order_3_vector::const_iterator >	Contact_order_3_frontier_iterator

typedef boost::transform_iterator< Get_contact_order_3, Contact_order_3_frontier_iterator >	Frontier_iterator

typedef boost::filter_iterator< Is_not_frontier, typename Contact_order_3_vector::const_iterator >	Not_frontier_iterator

typedef boost::filter_iterator< Have_labels, Contacts_iterator >	Contacts_of_label_iterator
	Iterator over interface edges of this connected component having an ancestor of or equal given pair of labels. More...

typedef boost::filter_iterator< Have_labels, Particles_iterator >	Particles_of_label_iterator
	Iterator over interface vertices of this connected component having an ancestor of or equal given label. More...

Constructors
	T_Molecular_interface_connected_component_data_structure (void)
	Default constructor. Do not initialize anything. More...

template<class InputIterator , class MolecularStructureClassifier >
	T_Molecular_interface_connected_component_data_structure (InputIterator begin, InputIterator end, MolecularStructureClassifier &classifier)
	Constructor used for bicolor and mediated interface connected components. More...

template<class InputIterator , class MolecularStructureClassifier >
	T_Molecular_interface_connected_component_data_structure (Partner_label partner_1, Partner_label partner_2, Mediator_label mediator, InputIterator begin, InputIterator end, MolecularStructureClassifier &classifier)

template<class InputIterator , class MolecularStructureClassifier >
	T_Molecular_interface_connected_component_data_structure (Partner_label partner_1, Partner_label partner_2, InputIterator begin, InputIterator end, MolecularStructureClassifier &classifier)

Particles
unsigned	get_number_of_particles (void) const
	Access to the number of interface vertices of the connected component. More...

unsigned	get_number_of_particles (Partner_label partner) const
	Access to the number of interface vertices with a label having partner as ancestor. More...

unsigned	get_number_of_particles (Mediator_label mediator) const
	Access to the number of interface vertices with a label having mediator as ancestor. More...

bool	is_at_interface (Particle_vertex_handle p) const

bool	is_empty (void) const
	Check that the connected component is empty. More...

Particles_iterator	particles_begin (void) const
	Starts the set of interface vertices of this connected component. More...

Particles_iterator	particles_end (void) const
	Terminates the set of interface vertices of this connected component. More...

Particles_of_label_iterator	particles_begin (Partner_label partner) const
	Starts the set of interface vertices with label having the input label as ancestor. More...

Particles_of_label_iterator	particles_begin (Mediator_label mediator) const
	Starts the set of interface vertices with label having the input label as ancestor. More...

Particles_of_label_iterator	particles_end (Partner_label partner) const
	Terminates the set of interface vertices with label having the input label as ancestor. More...

Particles_of_label_iterator	particles_end (Mediator_label mediator) const
	Terminates the set of interface vertices with label having the input label as ancestor. More...

Contacts
unsigned	get_number_of_contacts (void) const
	Access to the number of interface edges in the connected component. More...

unsigned	get_number_of_contacts (Partner_label partner_1, Partner_label partner_2) const
	Access to the number of bicolor edges with labels having the input labels as ancestors. More...

unsigned	get_number_of_contacts (Partner_label partner, Mediator_label mediator) const
	Access to the number of mediated edges with labels having the input labels as ancestors. More...

bool	is_at_frontier (Contact c) const

Contacts_iterator	begin (void) const
	Starts the set of alpha-complex edges in the connected component. More...

Contacts_iterator	end (void) const
	Terminates the set of alpha-complex edges in the connected component. More...

Contacts_iterator	contacts_begin (void) const
	Starts the set of alpha-complex edges in the connected component. More...

Contacts_iterator	contacts_end (void) const
	Terminates the set of alpha-complex edges in the connected component. More...

Contacts_of_label_iterator	contacts_begin (Partner_label partner_1, Partner_label partner_2) const
	Starts the set of alpha-complex edges with labels having the input labels as ancestors. More...

Contacts_of_label_iterator	contacts_begin (Partner_label partner, Mediator_label mediator) const
	Starts the set of alpha-complex edges with labels having the input labels as ancestors. More...

Contacts_of_label_iterator	contacts_end (Partner_label partner_1, Partner_label partner_2) const
	Terminates the set of alpha-complex edges with labels having the input labels as ancestors. More...

Contacts_of_label_iterator	contacts_end (Partner_label partner, Mediator_label mediator) const
	Terminates the set of alpha-complex edges with labels having the input labels as ancestors. More...

Contacts Order 3
unsigned	get_size_of_frontier (void) const
	Access to the number of bording facets in the connected component. More...

unsigned	get_number_of_contacts_order_3 (void) const

unsigned	get_number_of_contact_adjacencies (void) const

Not_frontier_iterator	not_frontier_begin (void) const
	Starts the set of bording facets of this connected component. More...

Not_frontier_iterator	not_frontier_end (void) const
	Terminates the set of bording facets of this connected component. More...

Frontier_iterator	frontier_begin (void) const
	Starts the set of bording facets of this connected component. More...

Frontier_iterator	frontier_end (void) const
	Terminates the set of bording facets of this connected component. More...

Detailed Description

template<class ParticleWithSystemLabelTraits, class MolecularModel = CSB::T_Alpha_complex_of_molecular_model<ParticleWithSystemLabelTraits>>
class SBL::CSB::T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >

Container for interfaces edges of the alpha-complex that are connected and share the same interface.

It is designed as a stl vector of edges of the alpha-complex.

Template Parameters

ParticleWithSystemLabelTraits	Traits class defining a particle with its system's label.
MolecularModel	Geometric model of a molecular structure.

Member Typedef Documentation

◆ Contacts_iterator

typedef Base::const_iterator Contacts_iterator

Iterator over the interface edges of this connected component.

◆ Contacts_of_label_iterator

typedef boost::filter_iterator<Have_labels, Contacts_iterator> Contacts_of_label_iterator

Iterator over interface edges of this connected component having an ancestor of or equal given pair of labels.

◆ Mediator_label

typedef Mediator_labels_traits::Label Mediator_label

System's label associated to a mediator.

◆ Mediator_labels_traits

typedef Molecular_structure_traits:: Mediator_labels_traits Mediator_labels_traits

Traits class providing the labels for the mediators.

◆ Particles_iterator

typedef boost::indirect_iterator<typename Particle_set::const_iterator, const Particle_vertex_handle> Particles_iterator

Iterator over the interface vertices in this connected component.

◆ Particles_of_label_iterator

typedef boost::filter_iterator<Have_labels, Particles_iterator> Particles_of_label_iterator

Iterator over interface vertices of this connected component having an ancestor of or equal given label.

◆ Partner_label

typedef Partner_labels_traits::Label Partner_label

System's label associated to a partner.

◆ Partner_labels_traits

typedef Molecular_structure_traits:: Partner_labels_traits Partner_labels_traits

Traits class providing the labels for the partners.

Constructor & Destructor Documentation

◆ T_Molecular_interface_connected_component_data_structure() [1/2]

T_Molecular_interface_connected_component_data_structure ( void )

inline

Default constructor. Do not initialize anything.

◆ T_Molecular_interface_connected_component_data_structure() [2/2]

T_Molecular_interface_connected_component_data_structure	(	InputIterator	begin,
		InputIterator	end,
		MolecularStructureClassifier &	classifier
	)

inline

Constructor used for bicolor and mediated interface connected components.

It initializes the alpha-complex, store all interface edges in between [begin, end) and construct the set of interface vertices. Note that the set of bording facets cannot be constructed since there may be an ambiguity on the labels depending they are hierarchical or primitives. This constructor is used when the user does not want to precise if the interface is bicolor or mediated.

Member Function Documentation

◆ begin()

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Contacts_iterator begin ( void ) const

inline

Starts the set of alpha-complex edges in the connected component.

◆ contacts_begin() [1/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Contacts_of_label_iterator contacts_begin	(	Partner_label	partner,
		Mediator_label	mediator
	)		const

inline

Starts the set of alpha-complex edges with labels having the input labels as ancestors.

◆ contacts_begin() [2/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Contacts_of_label_iterator contacts_begin	(	Partner_label	partner_1,
		Partner_label	partner_2
	)		const

inline

Starts the set of alpha-complex edges with labels having the input labels as ancestors.

◆ contacts_begin() [3/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Contacts_iterator contacts_begin ( void ) const

inline

Starts the set of alpha-complex edges in the connected component.

◆ contacts_end() [1/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Contacts_of_label_iterator contacts_end	(	Partner_label	partner,
		Mediator_label	mediator
	)		const

inline

Terminates the set of alpha-complex edges with labels having the input labels as ancestors.

◆ contacts_end() [2/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Contacts_of_label_iterator contacts_end	(	Partner_label	partner_1,
		Partner_label	partner_2
	)		const

inline

Terminates the set of alpha-complex edges with labels having the input labels as ancestors.

◆ contacts_end() [3/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Contacts_iterator contacts_end ( void ) const

inline

Terminates the set of alpha-complex edges in the connected component.

◆ end()

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Contacts_iterator end ( void ) const

inline

Terminates the set of alpha-complex edges in the connected component.

◆ frontier_begin()

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Frontier_iterator frontier_begin ( void ) const

inline

Starts the set of bording facets of this connected component.

◆ frontier_end()

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Frontier_iterator frontier_end ( void ) const

inline

Terminates the set of bording facets of this connected component.

◆ get_number_of_contacts() [1/3]

unsigned get_number_of_contacts	(	Partner_label	partner,
		Mediator_label	mediator
	)		const

inline

Access to the number of mediated edges with labels having the input labels as ancestors.

◆ get_number_of_contacts() [2/3]

unsigned get_number_of_contacts	(	Partner_label	partner_1,
		Partner_label	partner_2
	)		const

inline

Access to the number of bicolor edges with labels having the input labels as ancestors.

◆ get_number_of_contacts() [3/3]

unsigned get_number_of_contacts ( void ) const

inline

Access to the number of interface edges in the connected component.

◆ get_number_of_particles() [1/3]

unsigned get_number_of_particles ( Mediator_label mediator ) const

inline

Access to the number of interface vertices with a label having mediator as ancestor.

◆ get_number_of_particles() [2/3]

unsigned get_number_of_particles ( Partner_label partner ) const

inline

Access to the number of interface vertices with a label having partner as ancestor.

◆ get_number_of_particles() [3/3]

unsigned get_number_of_particles ( void ) const

inline

Access to the number of interface vertices of the connected component.

◆ get_size_of_frontier()

unsigned get_size_of_frontier ( void ) const

inline

Access to the number of bording facets in the connected component.

◆ is_empty()

bool is_empty ( void ) const

inline

Check that the connected component is empty.

◆ not_frontier_begin()

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Not_frontier_iterator not_frontier_begin ( void ) const

inline

Starts the set of bording facets of this connected component.

◆ not_frontier_end()

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Not_frontier_iterator not_frontier_end ( void ) const

inline

Terminates the set of bording facets of this connected component.

◆ particles_begin() [1/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Particles_of_label_iterator particles_begin ( Mediator_label mediator ) const

inline

Starts the set of interface vertices with label having the input label as ancestor.

◆ particles_begin() [2/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Particles_of_label_iterator particles_begin ( Partner_label partner ) const

inline

Starts the set of interface vertices with label having the input label as ancestor.

◆ particles_begin() [3/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Particles_iterator particles_begin ( void ) const

inline

Starts the set of interface vertices of this connected component.

◆ particles_end() [1/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Particles_of_label_iterator particles_end ( Mediator_label mediator ) const

inline

Terminates the set of interface vertices with label having the input label as ancestor.

◆ particles_end() [2/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Particles_of_label_iterator particles_end ( Partner_label partner ) const

inline

Terminates the set of interface vertices with label having the input label as ancestor.

◆ particles_end() [3/3]

T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >::Particles_iterator particles_end ( void ) const

inline

Terminates the set of interface vertices of this connected component.

Classes

Internal Public Types

Public Types

Iterator Types

Constructors

Particles

Contacts

Contacts Order 3

Detailed Description

template<class ParticleWithSystemLabelTraits, class MolecularModel = CSB::T_Alpha_complex_of_molecular_model<ParticleWithSystemLabelTraits>> class SBL::CSB::T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >

Member Typedef Documentation

◆ Contacts_iterator

◆ Contacts_of_label_iterator

◆ Mediator_label

◆ Mediator_labels_traits

◆ Particles_iterator

◆ Particles_of_label_iterator

◆ Partner_label

◆ Partner_labels_traits

Constructor & Destructor Documentation

◆ T_Molecular_interface_connected_component_data_structure() [1/2]

◆ T_Molecular_interface_connected_component_data_structure() [2/2]

Member Function Documentation

◆ begin()

◆ contacts_begin() [1/3]

◆ contacts_begin() [2/3]

◆ contacts_begin() [3/3]

◆ contacts_end() [1/3]

◆ contacts_end() [2/3]

◆ contacts_end() [3/3]

◆ end()

◆ frontier_begin()

◆ frontier_end()

◆ get_number_of_contacts() [1/3]

◆ get_number_of_contacts() [2/3]

◆ get_number_of_contacts() [3/3]

◆ get_number_of_particles() [1/3]

◆ get_number_of_particles() [2/3]

◆ get_number_of_particles() [3/3]

◆ get_size_of_frontier()

◆ is_empty()

◆ not_frontier_begin()

◆ not_frontier_end()

◆ particles_begin() [1/3]

◆ particles_begin() [2/3]

◆ particles_begin() [3/3]

◆ particles_end() [1/3]

◆ particles_end() [2/3]

◆ particles_end() [3/3]

template<class ParticleWithSystemLabelTraits, class MolecularModel = CSB::T_Alpha_complex_of_molecular_model<ParticleWithSystemLabelTraits>>
class SBL::CSB::T_Molecular_interface_connected_component_data_structure< ParticleWithSystemLabelTraits, MolecularModel >