Structural Bioinformatics Library
Template C++ / Python API for developping structural bioinformatics applications.
Class List
Here are the classes, structs, unions and interfaces with brief descriptions:
[detail level 1234]
 NProtein_complex_analysis_molecular_data_structures
 NSBL
 Cbranch_and_bound
 Cdp_mat_apurva
 CGet_not_annotator_option_nameReturns empty option name
 Clambda_matrix
 CMCI_ContactA class to store a contact between two subunits of an assembly
 CMCI_OligomersA class to store a set of oligomers of an assembly
 CModules_collectionBase module from which any module should inherit
 Cparameters
 Cproblem
 CT_Conformational_ensemble_analysis_traitsTraits class for instantiating the workflow T_Conformational_ensemble_analysis_workflow
 CT_Conformational_ensemble_analysis_workflowGeneric workflow of Conformational_ensemble_analysis for reading the command line options of the applications and running the calculations
 CT_Conformational_ensemble_comparison_traitsTraits class for instantiating the workflow T_Conformational_ensemble_comparison_workflow
 CT_Conformational_ensemble_comparison_workflowGeneric workflow of Conformational_ensemble_comparison for reading the command line options of the applications and running the calculations
 CT_Energy_landscape_analysis_traitsTraits class for instantiating the workflow T_Energy_landscape_analysis_workflow
 CT_Energy_landscape_analysis_workflowGeneric workflow of Energy_landscape_analysis for reading the command line options of the applications and running the calculations
 CT_Energy_landscape_comparison_traitsTraits class for instantiating the workflow T_Energy_landscape_comparison_workflow
 CT_Energy_landscape_comparison_workflowGeneric workflow of Energy_landscape_comparison for reading the command line options of the applications and running the calculations
 CT_Euclidean_distanceEuclidean distance between two conformations
 CT_Exploration_algorithm_basins_hoppingModel of exploration algorithm for basins hopping
 CT_Exploration_algorithm_TRRTModel of exploration algorithm for TRRT
 CT_Exploration_algorithm_TRRT_with_quenchModel of exploration algorithm for TRRT where samples are quenched before inserted
 CT_Exploration_parameters_defaultDefault representation of the parameters of the exploration algorithm
 CT_Exploration_parameters_with_layersRepresentation of the parameters of the exploration algorithm by layers
 CT_Exploration_parameters_with_memoryRepresentation of the parameters with a map from the samples of the algorithm database to the value of the parameters when the corresponding sample was inserted
 CT_Exploration_parameters_with_reinitRepresentation of the parameters with a reinitialization of temperature and displace delta in a fixed interval
 CT_Exploration_parameters_with_sample_mapRepresentation of the parameters with a map from the samples to their representation in the database of the algorithm
 CT_Gauss6A_function_traitsTraits class defining a mixture of gaussians and its gradient
 CT_Gauss6B_function_traitsTraits class defining a mixture of gaussians and its gradient
 CT_Himmelbleau_function_traitsTraits class defining the Himmelbleau function and its gradient
 CT_Landscape_explorer_traitsTraits class for instantiating the workflow T_Landscape_explorer_workflow
 CT_Landscape_explorer_workflowGeneric workflow of Landscape_explorer for reading the command line options of the applications and running the calculations
 CT_Lrmsd_distanceLeast RMSD between two conformations
 CT_Minimal_oritend_spanning_forest_moduleModule building the minimal spanning forest of a weighted bipartite graph
 CT_Monkey_function_traitsTraits class defining the Monkey function (function with a monkey saddle) and its gradient
 CT_Morse_function_for_elevated_NNGDensity function where values are already computed and stored in the NNG
 CT_Morse_function_for_NNG_density_from_distance_to_neighborsDensity function proportional to the mean distance between a given vertex and all his neighbors
 CT_Morse_function_for_NNG_density_from_gaussianDensity function proportional to a normal Gaussian estimation over the distances between a given vertex and all his neighbors
 CT_Morse_function_for_NNG_density_from_inverse_distance_to_neighborsDensity function inversely proportional to the distance sum between a given vertex and all his neighbors
 CT_Morse_function_for_NNG_density_from_neighborsDensity function proportional to the number of neighbors of a vertex in the NNG
 CT_Peaks_function_traitsTraits class defining the Peaks function and its gradient
 CT_PeaksE_function_traitsTraits class defining the PeaksE function and its gradient
 CT_Rastrigin_function_traitsTraits class defining the Rastrigin function and its gradient
 CT_Sample_extender_for_BHModel of extender engine for BH
 CT_Sample_extender_for_BH_with_energy_filterModel of extender engine for BH using the energy filter of the selector
 CT_Sample_extender_for_TRRTModel of extender engine for TRRT
 CT_Sample_extender_for_TRRT_with_Voronoi_extenderModel of extender engine for TRRT with the insurance the extended point belongs to the Voronoi cell of the selected conformation
 CT_Sample_selector_for_BHModel of selector engine for BH
 CT_Sample_selector_for_BH_with_energy_filterModel of selector engine for BH using energy filters
 CT_Sample_selector_for_stratifiedModel of selector engine with several layers of selectors
 CT_Sample_selector_for_TRRTModel of selector engine for TRRT
 CT_Sample_selector_hybrid_for_BHModel of selector engine for hybridizing basins hopping
 CT_Space_filling_model_coarse_graining_interpolated_coverEngine computing the interpolated cover between given inner and outer covers
 CT_Space_filling_model_coarse_graining_outer_coverEngine computing the outer cover of a set of balls from its inner cover
 CT_Space_filling_model_coarse_graining_traitsTraits class for instantiating the workflow T_Space_filling_model_coarse_graining_workflow
 CT_Space_filling_model_coarse_graining_workflowGeneric workflow of Space_filling_model_coarse_graining for reading the command line options of the applications and running the calculations
 CT_Space_filling_model_interface_finderCompute the interfaces graph of an input molecular complex
 CT_Space_filling_model_interface_finder_moduleModule building the Interfaces Graph of a molecular structure
 CT_Space_filling_model_interface_finder_traitsTraits class for instantiating the workflow T_Space_filling_model_interface_finder_workflow
 CT_Space_filling_model_interface_finder_workflowGeneric workflow of Space_filling_model_interface_finder for reading the command line options of the applications and running the calculations
 CT_Space_filling_model_interface_traitsTraits class for instantiating the workflow T_Space_filling_model_interface_workflow
 CT_Space_filling_model_interface_workflowGeneric workflow of Space_filling_model_interface for reading the command line options of the applications and running the calculations
 CT_Space_filling_model_shelling_diagram_comparison_traitsTraits class for instantiating the workflow T_Space_filling_model_shelling_diagram_comparison_workflow
 CT_Space_filling_model_shelling_diagram_comparison_workflowGeneric workflow of Space_filling_model_shelling_diagram_comparison for reading the command line options of the applications and running the calculations
 CT_Space_filling_model_shelling_diagram_surface_encoding_traitsTraits class for instantiating the workflow T_Space_filling_model_shelling_diagram_surface_encoding_workflow
 CT_Space_filling_model_shelling_diagram_surface_encoding_workflowGeneric workflow of Space_filling_model_shelling_diagram_surface_encoding for reading the command line options of the applications and running the calculations
 CT_Space_filling_model_surface_volume_traitsTraits class for instantiating the workflow T_Space_filling_model_surface_volume_workflow
 CT_Space_filling_model_surface_volume_workflowGeneric workflow of Space_filling_model_surface_volume for reading the command line options of the applications and running the calculations
 CT_Transition_graph_builder_from_sampled_energy_landscape_traitsTraits class for instantiating the workflow T_Transition_graph_builder_from_sampled_energy_landscape_workflow
 CT_Transition_graph_builder_from_sampled_energy_landscape_workflowGeneric workflow of Transition_graph_of_energy_landscape_builders for reading the command line options of the applications and running the calculations
 CT_Trigo_terrain_function_traitsTraits class defining a complex function example and its gradient